J3_9F9S_065
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 9F9S|1|R1|A|1217, 9F9S|1|R1|G|1445, 9F9S|1|R1|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_065 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1285
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|R1|C|1215
9F9S|1|R1|C|1216
9F9S|1|R1|A|1217
9F9S|1|R1|G|1218
9F9S|1|R1|A|1219
9F9S|1|R1|C|1220
*
9F9S|1|R1|G|1263
9F9S|1|R1|G|1264
9F9S|1|R1|G|1265
9F9S|1|R1|U|1266
9F9S|1|R1|G|1267
*
9F9S|1|R1|U|1442
9F9S|1|R1|U|1443
9F9S|1|R1|A|1444
9F9S|1|R1|G|1445
9F9S|1|R1|A|1446
9F9S|1|R1|C|1447
9F9S|1|R1|G|1448
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain CN
- Multiprotein-bridging factor 1
- Chain RD
- Small ribosomal subunit protein uS14A
- Chain RF
- Ubiquitin
- Chain Rk
- 40S ribosomal protein S10-A
Coloring options: