J3_9F9S_070
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9F9S|1|R1|U|1473, 9F9S|1|R1|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_070 not in the Motif Atlas
- Homologous match to J3_8P9A_084
- Geometric discrepancy: 0.144
- The information below is about J3_8P9A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
9F9S|1|R1|C|1470
9F9S|1|R1|A|1471
9F9S|1|R1|C|1472
9F9S|1|R1|U|1473
9F9S|1|R1|G|1474
*
9F9S|1|R1|C|1533
9F9S|1|R1|G|1534
9F9S|1|R1|U|1535
9F9S|1|R1|G|1536
9F9S|1|R1|C|1537
9F9S|1|R1|U|1538
9F9S|1|R1|G|1539
9F9S|1|R1|G|1540
*
9F9S|1|R1|C|1571
9F9S|1|R1|G|1572
9F9S|1|R1|A|1573
9F9S|1|R1|G|1574
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain Rf
- 40S ribosomal protein S5
- Chain Rs
- 40S ribosomal protein S18-A
- Chain Rt
- 40S ribosomal protein S19-A
- Chain Rz
- 40S ribosomal protein S25-A
Coloring options: