J3_9FIB_002
3D structure
- PDB id
- 9FIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of 30S-IF1-IF3-mRNA-GE81112A complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 9FIB|1|B|C|48, 9FIB|1|B|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9FIB_002 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0605
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9FIB|1|B|G|46
9FIB|1|B|C|47
9FIB|1|B|C|48
9FIB|1|B|U|49
9FIB|1|B|A|50
9FIB|1|B|A|51
9FIB|1|B|C|52
*
9FIB|1|B|G|359
9FIB|1|B|G|360
9FIB|1|B|G|361
9FIB|1|B|G|362
9FIB|1|B|A|363
9FIB|1|B|A|364
9FIB|1|B|U|365
9FIB|1|B|A|366
9FIB|1|B|U|367
*
9FIB|1|B|A|393
9FIB|1|B|G|394
9FIB|1|B|C|395
Current chains
- Chain B
- 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
- Chain P
- Small ribosomal subunit protein bS16
Coloring options: