J3_9G33_001
3D structure
- PDB id
- 9G33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stalled 90S - Utp23-Krr1-deltaC3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G33_001 not in the Motif Atlas
- Geometric match to J3_8CRE_078
- Geometric discrepancy: 0.2566
- The information below is about J3_8CRE_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9G33|1|D3|C|1161
9G33|1|D3|C|1162
9G33|1|D3|A|1163
9G33|1|D3|G|1164
*
9G33|1|D3|C|1581
9G33|1|D3|U|1582
9G33|1|D3|A|1583
9G33|1|D3|G|1584
9G33|1|D3|U|1585
9G33|1|D3|A|1586
9G33|1|D3|A|1587
*
9G33|1|D3|U|1609
9G33|1|D3|G|1610
9G33|1|D3|A|1611
9G33|1|D3|U|1612
9G33|1|D3|U|1613
9G33|1|D3|A|1614
9G33|1|D3|C|1615
9G33|1|D3|G|1616
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CJ
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain DF
- 40S ribosomal protein S5
- Chain DQ
- 40S ribosomal protein S16-A
- Chain Dc
- 40S ribosomal protein S28-A
- Chain UA
- Periodic tryptophan protein 2
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