J3_9G33_002

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9G33_002 not in the Motif Atlas

Geometric match to J3_4LFB_003

Geometric discrepancy: 0.2882

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9G33|1|D3|U|1168
9G33|1|D3|G|1169
9G33|1|D3|G|1170
9G33|1|D3|A|1171
*
9G33|1|D3|U|1468
9G33|1|D3|A|1469
9G33|1|D3|C|1470
*
9G33|1|D3|G|1574
9G33|1|D3|G|1575
9G33|1|D3|A|1576
9G33|1|D3|A|1577

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain JG

Ribosomal RNA small subunit methyltransferase NEP1