J3_9G6J_014
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G6J_014 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.0824
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9G6J|1|1|U|1522
9G6J|1|1|C|1523
9G6J|1|1|G|1524
9G6J|1|1|A|1525
9G6J|1|1|U|1526
9G6J|1|1|C|1527
*
9G6J|1|1|G|1587
9G6J|1|1|G|1588
9G6J|1|1|A|1589
9G6J|1|1|A|1590
9G6J|1|1|U|1591
*
9G6J|1|1|A|1608
9G6J|1|1|A|1609
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 8
- Ribosomal 60S subunit protein L25
- Chain AH
- Ribosomal 60S subunit protein L34B
- Chain AL
- Ribosomal 60S subunit protein L38
- Chain AM
- 60S ribosomal protein L39
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