J3_9G6J_039
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 9G6J|1|A|U|1399, 9G6J|1|A|U|1400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G6J_039 not in the Motif Atlas
- Geometric match to J3_8CRE_084
- Geometric discrepancy: 0.1042
- The information below is about J3_8CRE_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.5
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9G6J|1|A|A|1321
9G6J|1|A|A|1322
9G6J|1|A|C|1323
*
9G6J|1|A|G|1372
9G6J|1|A|G|1373
9G6J|1|A|A|1374
9G6J|1|A|C|1375
*
9G6J|1|A|G|1398
9G6J|1|A|U|1399
9G6J|1|A|U|1400
9G6J|1|A|U|1401
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain G
- Ribosomal 40S subunit protein S5
- Chain R
- Ribosomal 40S subunit protein S16A
- Chain S
- Ribosomal 40S subunit protein S17B
- Chain V
- Ribosomal 40S subunit protein S20
- Chain e
- Ribosomal 40S subunit protein S29A
- Chain h
- Guanine nucleotide-binding protein subunit beta-like protein
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