J3_9G8M_009

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AGAAG*CGUGG

Length

12 nucleotides

Bulged bases

9G8M|1|L5|A|1805, 9G8M|1|L5|G|1832, 9G8M|1|L5|U|1833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|U|1726
9G8M|1|L5|U|1727
*
9G8M|1|L5|A|1802
9G8M|1|L5|G|1803
9G8M|1|L5|A|1804
9G8M|1|L5|A|1805
9G8M|1|L5|G|1806
*
9G8M|1|L5|C|1831
9G8M|1|L5|G|1832
9G8M|1|L5|U|1833
9G8M|1|L5|G|1834
9G8M|1|L5|G|1835

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29