J3_9G8M_010

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9G8M|1|L5|A|2394, 9G8M|1|L5|U|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9G8M_010 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.2064

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9G8M|1|L5|C|2391
9G8M|1|L5|G|2392
9G8M|1|L5|A|2393
9G8M|1|L5|A|2394
9G8M|1|L5|G|2395
9G8M|1|L5|U|2396
9G8M|1|L5|G|2397
*
9G8M|1|L5|C|2803
9G8M|1|L5|A|2804
9G8M|1|L5|A|2805
*
9G8M|1|L5|U|2817
9G8M|1|L5|C|2818
9G8M|1|L5|U|2819
9G8M|1|L5|G|2820

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34