J3_9G8M_012
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G8M_012 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.1773
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9G8M|1|L5|U|2438
9G8M|1|L5|C|2439
9G8M|1|L5|G|2440
9G8M|1|L5|G|2441
9G8M|1|L5|U|2442
9G8M|1|L5|C|2443
*
9G8M|1|L5|G|2513
9G8M|1|L5|G|2514
9G8M|1|L5|A|2515
9G8M|1|L5|G|2516
9G8M|1|L5|U|2517
*
9G8M|1|L5|A|2534
9G8M|1|L5|A|2535
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Lg
- 60S ribosomal protein L34
- Chain Lk
- 60S ribosomal protein L38
- Chain Ll
- 60S ribosomal protein L39
Coloring options: