J3_9G8M_018
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G8M_018 not in the Motif Atlas
- Geometric match to J3_7A0S_009
- Geometric discrepancy: 0.3686
- The information below is about J3_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9G8M|1|L5|C|3935
9G8M|1|L5|G|3936
9G8M|1|L5|G|3937
*
9G8M|1|L5|C|4072
9G8M|1|L5|U|4073
9G8M|1|L5|G|4074
9G8M|1|L5|A|4075
9G8M|1|L5|C|4076
*
9G8M|1|L5|G|4166
9G8M|1|L5|G|4167
9G8M|1|L5|A|4168
9G8M|1|L5|C|4169
9G8M|1|L5|A|4170
9G8M|1|L5|G|4171
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
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