J3_9G8M_021

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9G8M|1|L5|A|4462, 9G8M|1|L5|U|4463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9G8M_021 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.131

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

9G8M|1|L5|U|4461
9G8M|1|L5|A|4462
9G8M|1|L5|U|4463
9G8M|1|L5|C|4464
*
9G8M|1|L5|G|4489
9G8M|1|L5|U|4490
9G8M|1|L5|U|4491
*
9G8M|1|L5|A|4505
9G8M|1|L5|C|4506
9G8M|1|L5|U|4507
9G8M|1|L5|A|4508
9G8M|1|L5|A|4509
9G8M|1|L5|U|4510
9G8M|1|L5|A|4511

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23