J3_9G8M_029
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9G8M|1|S2|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G8M_029 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1242
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9G8M|1|S2|A|938
9G8M|1|S2|U|939
9G8M|1|S2|U|940
9G8M|1|S2|C|941
*
9G8M|1|S2|G|985
9G8M|1|S2|G|986
9G8M|1|S2|A|987
9G8M|1|S2|C|988
9G8M|1|S2|C|989
9G8M|1|S2|A|990
9G8M|1|S2|G|991
9G8M|1|S2|A|992
9G8M|1|S2|G|993
*
9G8M|1|S2|C|1000
9G8M|1|S2|A|1001
9G8M|1|S2|U|1002
9G8M|1|S2|U|1003
9G8M|1|S2|U|1004
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain Lp
- 60S ribosomal protein L37a
- Chain SB
- 40S ribosomal protein S3a
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- 40S ribosomal protein S14
- Chain Sa
- 40S ribosomal protein S26
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