3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGG*CUUGA*UGACG
Length
13 nucleotides
Bulged bases
9GFT|1|0|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GFT_004 not in the Motif Atlas
Homologous match to J3_5J7L_051
Geometric discrepancy: 0.1167
The information below is about J3_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

9GFT|1|0|C|586
9GFT|1|0|G|587
9GFT|1|0|G|588
*
9GFT|1|0|C|651
9GFT|1|0|U|652
9GFT|1|0|U|653
9GFT|1|0|G|654
9GFT|1|0|A|655
*
9GFT|1|0|U|751
9GFT|1|0|G|752
9GFT|1|0|A|753
9GFT|1|0|C|754
9GFT|1|0|G|755

Current chains

Chain 0
16S ribosomal RNA

Nearby chains

Chain 7
Small ribosomal subunit protein uS8
Chain E
Small ribosomal subunit protein uS12
Chain H
Small ribosomal subunit protein uS15
Chain J
Small ribosomal subunit protein uS17

Coloring options:


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