J3_9GFT_023

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9GFT|1|AA|U|871, 9GFT|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GFT_023 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1021

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9GFT|1|AA|C|826
9GFT|1|AA|U|827
9GFT|1|AA|U|828
9GFT|1|AA|G|829
*
9GFT|1|AA|C|857
9GFT|1|AA|G|858
9GFT|1|AA|G|859
9GFT|1|AA|A|860
9GFT|1|AA|G|861
*
9GFT|1|AA|C|868
9GFT|1|AA|G|869
9GFT|1|AA|U|870
9GFT|1|AA|U|871
9GFT|1|AA|A|872
9GFT|1|AA|A|873
9GFT|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A1

Small ribosomal subunit protein bS21

Chain AB

Small ribosomal subunit protein uS2

Chain AH

Small ribosomal subunit protein uS8