J3_9GFT_028
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 9GFT|1|AA|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GFT_028 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.1659
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9GFT|1|AA|C|990
9GFT|1|AA|U|991
9GFT|1|AA|U|992
9GFT|1|AA|G|993
9GFT|1|AA|A|994
9GFT|1|AA|C|995
9GFT|1|AA|A|996
9GFT|1|AA|U|997
*
9GFT|1|AA|A|1044
9GFT|1|AA|C|1045
9GFT|1|AA|A|1046
9GFT|1|AA|G|1047
*
9GFT|1|AA|C|1210
9GFT|1|AA|U|1211
9GFT|1|AA|U|1212
9GFT|1|AA|A|1213
9GFT|1|AA|C|1214
9GFT|1|AA|G|1215
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AM
- Small ribosomal subunit protein uS14
Coloring options: