J3_9GFT_053
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9GFT|1|N|A|504, 9GFT|1|N|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GFT_053 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1231
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9GFT|1|N|G|30
9GFT|1|N|C|31
*
9GFT|1|N|G|474
9GFT|1|N|C|475
9GFT|1|N|G|476
9GFT|1|N|A|477
9GFT|1|N|A|478
9GFT|1|N|A|479
9GFT|1|N|A|480
9GFT|1|N|G|481
9GFT|1|N|A|482
9GFT|1|N|A|483
9GFT|1|N|C|484
*
9GFT|1|N|G|496
9GFT|1|N|A|497
9GFT|1|N|G|498
9GFT|1|N|U|499
9GFT|1|N|G|500
9GFT|1|N|A|501
9GFT|1|N|A|502
9GFT|1|N|A|503
9GFT|1|N|A|504
9GFT|1|N|A|505
9GFT|1|N|G|506
9GFT|1|N|A|507
9GFT|1|N|A|508
9GFT|1|N|C|509
9GFT|1|N|C|510
Current chains
- Chain N
- 23S RNA
Nearby chains
- Chain d
- Large ribosomal subunit protein bL20
- Chain f
- Large ribosomal subunit protein uL22
- Chain h
- Large ribosomal subunit protein uL24
Coloring options: