J3_9GFT_061

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9GFT|1|N|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GFT_061 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1282

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9GFT|1|N|C|1306
9GFT|1|N|A|1307
9GFT|1|N|A|1308
9GFT|1|N|G|1309
*
9GFT|1|N|C|1605
9GFT|1|N|C|1606
9GFT|1|N|C|1607
9GFT|1|N|A|1608
9GFT|1|N|A|1609
9GFT|1|N|A|1610
9GFT|1|N|C|1611
*
9GFT|1|N|G|1620
9GFT|1|N|U|1621
9GFT|1|N|G|1622

Current chains

Chain N

23S RNA

Nearby chains

Chain p

Large ribosomal subunit protein bL34