J3_9GHH_005

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

9GHH|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHH_005 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.1582

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9GHH|1|A|C|272
9GHH|1|A|A|273
9GHH|1|A|A|274
9GHH|1|A|A|275
9GHH|1|A|C|276
*
9GHH|1|A|G|295
9GHH|1|A|G|296
9GHH|1|A|G|297
9GHH|1|A|U|298
9GHH|1|A|U|299
9GHH|1|A|G|300
9GHH|1|A|U|301
9GHH|1|A|A|302
*
9GHH|1|A|U|415
9GHH|1|A|G|416

Current chains

Chain A

23S rRNA

Nearby chains