J3_9GHH_009

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

9GHH|1|A|A|1128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHH_009 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.2792

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

9GHH|1|A|G|1099
9GHH|1|A|G|1100
9GHH|1|A|A|1101
*
9GHH|1|A|U|1125
9GHH|1|A|U|1126
9GHH|1|A|U|1127
9GHH|1|A|A|1128
9GHH|1|A|A|1129
9GHH|1|A|A|1130
9GHH|1|A|G|1131
*
9GHH|1|A|C|1146
9GHH|1|A|A|1147
9GHH|1|A|C|1148

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36