J3_9GMO_011
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GAAG*CC(A2M)UAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9GMO|1|A|U|2788, 9GMO|1|A|A|2789, 9GMO|1|A|U|2790
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GMO_011 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.0773
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9GMO|1|A|G|2402
9GMO|1|A|A|2403
9GMO|1|A|A|2404
9GMO|1|A|G|2405
*
9GMO|1|A|C|2785
9GMO|1|A|C|2786
9GMO|1|A|A2M|2787
9GMO|1|A|U|2788
9GMO|1|A|A|2789
9GMO|1|A|U|2790
9GMO|1|A|C|2791
*
9GMO|1|A|G|2800
9GMO|1|A|U|2801
9GMO|1|A|C|2802
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain a
- 60S ribosomal protein L34
- Chain d
- 60S ribosomal protein L37
- Chain f
- 60S ribosomal protein L39
Coloring options: