3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CAAG*CCCAAAC*GUG
Length
14 nucleotides
Bulged bases
9HA6|1|A|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9HA6_008 not in the Motif Atlas
Homologous match to J3_7A0S_007
Geometric discrepancy: 0.1368
The information below is about J3_7A0S_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_71677.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

9HA6|1|A|C|1306
9HA6|1|A|A|1307
9HA6|1|A|A|1308
9HA6|1|A|G|1309
*
9HA6|1|A|C|1605
9HA6|1|A|C|1606
9HA6|1|A|C|1607
9HA6|1|A|A|1608
9HA6|1|A|A|1609
9HA6|1|A|A|1610
9HA6|1|A|C|1611
*
9HA6|1|A|G|1620
9HA6|1|A|U|1621
9HA6|1|A|G|1622

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain 2
Large ribosomal subunit protein bL34

Coloring options:


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