J3_9HA6_013

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUA*UAG*CAUAAG

Length

12 nucleotides

Bulged bases

9HA6|1|A|U|2334, 9HA6|1|A|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA6_013 not in the Motif Atlas

Geometric match to J3_5J7L_045

Geometric discrepancy: 0.1601

The information below is about J3_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

9HA6|1|A|C|2295
9HA6|1|A|U|2296
9HA6|1|A|A|2297
*
9HA6|1|A|U|2321
9HA6|1|A|A|2322
9HA6|1|A|G|2323
*
9HA6|1|A|C|2332
9HA6|1|A|A|2333
9HA6|1|A|U|2334
9HA6|1|A|A|2335
9HA6|1|A|A|2336
9HA6|1|A|G|2337

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

Large ribosomal subunit protein uL5

Chain O

Large ribosomal subunit protein uL18

Chain W

Large ribosomal subunit protein bL27