J3_9HA6_018
3D structure
- PDB id
- 9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mature 50S subunit supplemented with Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 9HA6|1|B|C|12, 9HA6|1|B|G|13, 9HA6|1|B|U|14, 9HA6|1|B|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HA6_018 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.3857
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9HA6|1|B|G|10
9HA6|1|B|C|11
9HA6|1|B|C|12
9HA6|1|B|G|13
9HA6|1|B|U|14
9HA6|1|B|A|15
9HA6|1|B|G|16
*
9HA6|1|B|C|68
9HA6|1|B|G|69
9HA6|1|B|C|70
*
9HA6|1|B|G|106
9HA6|1|B|G|107
9HA6|1|B|A|108
9HA6|1|B|A|109
9HA6|1|B|C|110
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- Large ribosomal subunit protein uL18
- Chain V
- Large ribosomal subunit protein bL25
- Chain W
- Large ribosomal subunit protein bL27
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