3D structure

PDB id
9HAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
C_(L29)-/(L22)- precursor supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
5.06 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
9HAM|1|A|A|1302
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9HAM_004 not in the Motif Atlas
Homologous match to J3_5J7L_041
Geometric discrepancy: 0.2276
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

9HAM|1|A|C|1298
9HAM|1|A|G|1299
9HAM|1|A|G|1300
9HAM|1|A|A|1301
9HAM|1|A|A|1302
9HAM|1|A|G|1303
*
9HAM|1|A|C|1625
9HAM|1|A|A|1626
9HAM|1|A|G|1627
*
9HAM|1|A|C|1639
9HAM|1|A|A|1640
9HAM|1|A|A|1641
9HAM|1|A|G|1642

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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