J3_9HLZ_002

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUCUA*UAG*CUGG

Length

14 nucleotides

Bulged bases

9HLZ|1|AA|U|595, 9HLZ|1|AA|U|683, 9HLZ|1|AA|G|684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HLZ_002 not in the Motif Atlas

Geometric match to J3_9DFE_007

Geometric discrepancy: 0.1775

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

9HLZ|1|AA|C|592
9HLZ|1|AA|G|593
9HLZ|1|AA|A|594
9HLZ|1|AA|U|595
9HLZ|1|AA|C|596
9HLZ|1|AA|U|597
9HLZ|1|AA|A|598
*
9HLZ|1|AA|U|664
9HLZ|1|AA|A|665
9HLZ|1|AA|G|666
*
9HLZ|1|AA|C|682
9HLZ|1|AA|U|683
9HLZ|1|AA|G|684
9HLZ|1|AA|G|685

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2m

Chain YY

Large ribosomal subunit protein bL34m