J3_9HLZ_004

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAG*CGAAC*GAUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HLZ_004 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1171

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9HLZ|1|AA|A|607
9HLZ|1|AA|A|608
9HLZ|1|AA|G|609
*
9HLZ|1|AA|C|623
9HLZ|1|AA|G|624
9HLZ|1|AA|A|625
9HLZ|1|AA|A|626
9HLZ|1|AA|C|627
*
9HLZ|1|AA|G|651
9HLZ|1|AA|A|652
9HLZ|1|AA|U|653
9HLZ|1|AA|U|654

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2m