J3_9HLZ_008

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAG*UGUAGAC*GUA

Length

14 nucleotides

Bulged bases

9HLZ|1|AA|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HLZ_008 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2715

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9HLZ|1|AA|U|1337
9HLZ|1|AA|A|1338
9HLZ|1|AA|A|1339
9HLZ|1|AA|G|1340
*
9HLZ|1|AA|U|1557
9HLZ|1|AA|G|1558
9HLZ|1|AA|U|1559
9HLZ|1|AA|A|1560
9HLZ|1|AA|G|1561
9HLZ|1|AA|A|1562
9HLZ|1|AA|C|1563
*
9HLZ|1|AA|G|1572
9HLZ|1|AA|U|1573
9HLZ|1|AA|A|1574

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 33

Large ribosomal subunit protein mL41

Chain YY

Large ribosomal subunit protein bL34m

Chain dd

Large ribosomal subunit protein mL67