J3_9HLZ_015

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUA*UAA*UAUAAC

Length

12 nucleotides

Bulged bases

9HLZ|1|AA|U|2600, 9HLZ|1|AA|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HLZ_015 not in the Motif Atlas

Homologous match to J3_7A0S_010

Geometric discrepancy: 0.4043

The information below is about J3_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.1

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

9HLZ|1|AA|G|2445
9HLZ|1|AA|U|2446
9HLZ|1|AA|A|2447
*
9HLZ|1|AA|U|2587
9HLZ|1|AA|A|2588
9HLZ|1|AA|A|2589
*
9HLZ|1|AA|U|2598
9HLZ|1|AA|A|2599
9HLZ|1|AA|U|2600
9HLZ|1|AA|A|2601
9HLZ|1|AA|A|2602
9HLZ|1|AA|C|2603

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain EE

Large ribosomal subunit protein uL5m

Chain KK

Large ribosomal subunit protein uL16m

Chain RR

Large ribosomal subunit protein bL27m