J3_9HLZ_017

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUC*GUU*AUUAAAA

Length

14 nucleotides

Bulged bases

9HLZ|1|AA|U|2784, 9HLZ|1|AA|U|2785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HLZ_017 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.2145

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9HLZ|1|AA|U|2783
9HLZ|1|AA|U|2784
9HLZ|1|AA|U|2785
9HLZ|1|AA|C|2786
*
9HLZ|1|AA|G|2812
9HLZ|1|AA|U|2813
9HLZ|1|AA|U|2814
*
9HLZ|1|AA|A|2828
9HLZ|1|AA|U|2829
9HLZ|1|AA|U|2830
9HLZ|1|AA|A|2831
9HLZ|1|AA|A|2832
9HLZ|1|AA|A|2833
9HLZ|1|AA|A|2834

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain II

Large ribosomal subunit protein uL14m