J3_9HLZ_032
3D structure
- PDB id
- 9HLZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUUAG*CAAAACU*AAUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 9HLZ|1|r|U|1222
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HLZ_032 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.2667
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9HLZ|1|r|C|1110
9HLZ|1|r|U|1111
9HLZ|1|r|U|1112
9HLZ|1|r|U|1113
9HLZ|1|r|A|1114
9HLZ|1|r|G|1115
*
9HLZ|1|r|C|1154
9HLZ|1|r|A|1155
9HLZ|1|r|A|1156
9HLZ|1|r|A|1157
9HLZ|1|r|A|1158
9HLZ|1|r|C|1159
9HLZ|1|r|U|1160
*
9HLZ|1|r|A|1219
9HLZ|1|r|A|1220
9HLZ|1|r|U|1221
9HLZ|1|r|U|1222
9HLZ|1|r|A|1223
9HLZ|1|r|A|1224
9HLZ|1|r|G|1225
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS3m
- Chain E
- Small ribosomal subunit protein uS5m
- Chain I
- Small ribosomal subunit protein uS9m
- Chain J
- Small ribosomal subunit protein uS10m
- Chain N
- Small ribosomal subunit protein uS14m
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