J3_9HM0_004

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAG*CGAAC*GAUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HM0_004 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1154

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9HM0|1|AA|A|607
9HM0|1|AA|A|608
9HM0|1|AA|G|609
*
9HM0|1|AA|C|623
9HM0|1|AA|G|624
9HM0|1|AA|A|625
9HM0|1|AA|A|626
9HM0|1|AA|C|627
*
9HM0|1|AA|G|651
9HM0|1|AA|A|652
9HM0|1|AA|U|653
9HM0|1|AA|U|654

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2m