J3_9HM0_008

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAAG*UGUAGAC*GUA

Length

14 nucleotides

Bulged bases

9HM0|1|AA|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HM0_008 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.3064

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9HM0|1|AA|U|1337
9HM0|1|AA|A|1338
9HM0|1|AA|A|1339
9HM0|1|AA|G|1340
*
9HM0|1|AA|U|1557
9HM0|1|AA|G|1558
9HM0|1|AA|U|1559
9HM0|1|AA|A|1560
9HM0|1|AA|G|1561
9HM0|1|AA|A|1562
9HM0|1|AA|C|1563
*
9HM0|1|AA|G|1572
9HM0|1|AA|U|1573
9HM0|1|AA|A|1574

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 33

Large ribosomal subunit protein mL41

Chain YY

Large ribosomal subunit protein bL34m

Chain dd

Large ribosomal subunit protein mL67