J3_9HM0_013

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCG*CUAAU*AGACAA

Length

14 nucleotides

Bulged bases

9HM0|1|AA|A|2093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HM0_013 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.4651

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9HM0|1|AA|U|1993
9HM0|1|AA|C|1994
9HM0|1|AA|G|1995
*
9HM0|1|AA|C|2091
9HM0|1|AA|U|2092
9HM0|1|AA|A|2093
9HM0|1|AA|A|2094
9HM0|1|AA|U|2095
*
9HM0|1|AA|A|2249
9HM0|1|AA|G|2250
9HM0|1|AA|A|2251
9HM0|1|AA|C|2252
9HM0|1|AA|A|2253
9HM0|1|AA|A|2254

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2m

Chain GG

Large ribosomal subunit protein bL9m

Chain SS

Large ribosomal subunit protein bL28m