J3_9HM0_017

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUC*GUU*AUUAAAA

Length

14 nucleotides

Bulged bases

9HM0|1|AA|U|2784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HM0_017 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.2109

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9HM0|1|AA|U|2783
9HM0|1|AA|U|2784
9HM0|1|AA|U|2785
9HM0|1|AA|C|2786
*
9HM0|1|AA|G|2812
9HM0|1|AA|U|2813
9HM0|1|AA|U|2814
*
9HM0|1|AA|A|2828
9HM0|1|AA|U|2829
9HM0|1|AA|U|2830
9HM0|1|AA|A|2831
9HM0|1|AA|A|2832
9HM0|1|AA|A|2833
9HM0|1|AA|A|2834

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain II

Large ribosomal subunit protein uL14m