J3_9HUS_009

3D structure

PDB id

9HUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9HUS|1|b|A|1609, 9HUS|1|b|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HUS_009 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1783

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9HUS|1|b|C|1306
9HUS|1|b|A|1307
9HUS|1|b|A|1308
9HUS|1|b|G|1309
*
9HUS|1|b|C|1605
9HUS|1|b|C|1606
9HUS|1|b|C|1607
9HUS|1|b|A|1608
9HUS|1|b|A|1609
9HUS|1|b|A|1610
9HUS|1|b|C|1611
*
9HUS|1|b|G|1620
9HUS|1|b|U|1621
9HUS|1|b|G|1622

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34