J3_9I3L_011

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9I3L|1|b|A|1611

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I3L_011 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1574

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9I3L|1|b|C|1308
9I3L|1|b|A|1309
9I3L|1|b|A|1310
9I3L|1|b|G|1311
*
9I3L|1|b|C|1607
9I3L|1|b|C|1608
9I3L|1|b|C|1609
9I3L|1|b|A|1610
9I3L|1|b|A|1611
9I3L|1|b|A|1612
9I3L|1|b|C|1613
*
9I3L|1|b|G|1622
9I3L|1|b|U|1623
9I3L|1|b|G|1624

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34