J3_9I3L_014

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9I3L|1|b|A|2202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I3L_014 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.1978

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9I3L|1|b|C|2095
9I3L|1|b|U|2096
9I3L|1|b|G|2097
*
9I3L|1|b|C|2200
9I3L|1|b|U|2201
9I3L|1|b|A|2202
9I3L|1|b|A|2203
9I3L|1|b|C|2204
*
9I3L|1|b|G|2227
9I3L|1|b|G|2228
9I3L|1|b|A|2229
9I3L|1|b|C|2230
9I3L|1|b|A|2231
9I3L|1|b|G|2232

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain c

Large ribosomal subunit protein uL2

Chain h

Large ribosomal subunit protein bL9