J3_9I5T_006
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGAUCUA*UAG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9I5T|1|A|U|721, 9I5T|1|A|A|827, 9I5T|1|A|A|828
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I5T_006 not in the Motif Atlas
- Geometric match to J3_8B0X_016
- Geometric discrepancy: 0.0608
- The information below is about J3_8B0X_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9I5T|1|A|U|718
9I5T|1|A|G|719
9I5T|1|A|A|720
9I5T|1|A|U|721
9I5T|1|A|C|722
9I5T|1|A|U|723
9I5T|1|A|A|724
*
9I5T|1|A|U|808
9I5T|1|A|A|809
9I5T|1|A|G|810
*
9I5T|1|A|C|826
9I5T|1|A|A|827
9I5T|1|A|A|828
9I5T|1|A|A|829
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL34
- Chain D
- Large ribosomal subunit protein uL2
Coloring options: