J3_9I5T_012

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9I5T|1|A|A|2208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I5T_012 not in the Motif Atlas

Geometric match to J3_8B0X_021

Geometric discrepancy: 0.1073

The information below is about J3_8B0X_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9I5T|1|A|U|2101
9I5T|1|A|U|2102
9I5T|1|A|G|2103
*
9I5T|1|A|C|2206
9I5T|1|A|U|2207
9I5T|1|A|A|2208
9I5T|1|A|A|2209
9I5T|1|A|C|2210
*
9I5T|1|A|G|2224
9I5T|1|A|G|2225
9I5T|1|A|A|2226
9I5T|1|A|C|2227
9I5T|1|A|A|2228
9I5T|1|A|G|2229

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain D

Large ribosomal subunit protein uL2

Chain h

Large ribosomal subunit protein bL9