J3_9I5T_014
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 9I5T|1|A|C|2335, 9I5T|1|A|A|2337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I5T_014 not in the Motif Atlas
- Geometric match to J3_8B0X_022
- Geometric discrepancy: 0.1757
- The information below is about J3_8B0X_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9I5T|1|A|C|2296
9I5T|1|A|U|2297
9I5T|1|A|C|2298
*
9I5T|1|A|G|2322
9I5T|1|A|A|2323
9I5T|1|A|G|2324
*
9I5T|1|A|C|2333
9I5T|1|A|A|2334
9I5T|1|A|C|2335
9I5T|1|A|A|2336
9I5T|1|A|A|2337
9I5T|1|A|G|2338
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 11
- Large ribosomal subunit protein uL5
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain R
- Large ribosomal subunit protein uL18
- Chain Z
- Large ribosomal subunit protein bL27
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