J3_9I5V_019
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUG*CUUGA*UGACA
- Length
- 13 nucleotides
- Bulged bases
- 9I5V|1|a|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I5V_019 not in the Motif Atlas
- Geometric match to J3_4LFB_015
- Geometric discrepancy: 0.0899
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.7
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9I5V|1|a|U|586
9I5V|1|a|U|587
9I5V|1|a|G|588
*
9I5V|1|a|C|651
9I5V|1|a|U|652
9I5V|1|a|U|653
9I5V|1|a|G|654
9I5V|1|a|A|655
*
9I5V|1|a|U|751
9I5V|1|a|G|752
9I5V|1|a|A|753
9I5V|1|a|C|754
9I5V|1|a|A|755
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain e
- Small ribosomal subunit protein uS17
- Chain f
- Small ribosomal subunit protein uS15
- Chain j
- Small ribosomal subunit protein uS12
- Chain o
- Small ribosomal subunit protein uS8
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