J3_9I88_017

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9I88|1|A|A|2545, 9I88|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I88_017 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1139

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9I88|1|A|C|2544
9I88|1|A|A|2545
9I88|1|A|U|2546
9I88|1|A|C|2547
*
9I88|1|A|G|2572
9I88|1|A|U|2573
9I88|1|A|U|2574
*
9I88|1|A|A|2588
9I88|1|A|U|2589
9I88|1|A|U|2590
9I88|1|A|A|2591
9I88|1|A|A|2592
9I88|1|A|A|2593
9I88|1|A|G|2594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL14