J3_9JMK_011

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9JMK|1|A|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JMK_011 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.2182

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9JMK|1|A|C|2091
9JMK|1|A|U|2092
9JMK|1|A|G|2093
*
9JMK|1|A|C|2196
9JMK|1|A|U|2197
9JMK|1|A|A|2198
9JMK|1|A|A|2199
9JMK|1|A|C|2200
*
9JMK|1|A|G|2223
9JMK|1|A|G|2224
9JMK|1|A|A|2225
9JMK|1|A|C|2226
9JMK|1|A|A|2227
9JMK|1|A|G|2228

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28