J3_9JMK_013

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9JMK|1|A|A|2518, 9JMK|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JMK_013 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.213

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9JMK|1|A|C|2517
9JMK|1|A|A|2518
9JMK|1|A|U|2519
9JMK|1|A|C|2520
*
9JMK|1|A|G|2545
9JMK|1|A|U|2546
9JMK|1|A|A|2547
*
9JMK|1|A|U|2561
9JMK|1|A|U|2562
9JMK|1|A|U|2563
9JMK|1|A|A|2564
9JMK|1|A|A|2565
9JMK|1|A|A|2566
9JMK|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14