3D structure

PDB id
9MKK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCCUAAC*GGGGAAUAU*AGC
Length
19 nucleotides
Bulged bases
9MKK|1|A|C|48, 9MKK|1|A|A|50, 9MKK|1|A|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9MKK_002 not in the Motif Atlas
Geometric match to J3_5J7L_050
Geometric discrepancy: 0.1339
The information below is about J3_5J7L_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

9MKK|1|A|G|46
9MKK|1|A|C|47
9MKK|1|A|C|48
9MKK|1|A|U|49
9MKK|1|A|A|50
9MKK|1|A|A|51
9MKK|1|A|C|52
*
9MKK|1|A|G|359
9MKK|1|A|G|360
9MKK|1|A|G|361
9MKK|1|A|G|362
9MKK|1|A|A|363
9MKK|1|A|A|364
9MKK|1|A|U|365
9MKK|1|A|A|366
9MKK|1|A|U|367
*
9MKK|1|A|A|393
9MKK|1|A|G|394
9MKK|1|A|C|395

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain P
Small ribosomal subunit protein bS16

Coloring options:


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