J3_9MKK_022

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MKK_022 not in the Motif Atlas

Geometric match to J3_5J7L_069

Geometric discrepancy: 0.1243

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9MKK|1|a|G|1424
9MKK|1|a|G|1425
9MKK|1|a|G|1426
9MKK|1|a|A|1427
9MKK|1|a|C|1428
9MKK|1|a|G|1429
*
9MKK|1|a|C|1564
9MKK|1|a|C|1565
*
9MKK|1|a|G|1568
9MKK|1|a|A|1569
9MKK|1|a|A|1570
9MKK|1|a|A|1571
9MKK|1|a|A|1572
9MKK|1|a|G|1573
9MKK|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2