J3_9NDP_011
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GAU*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NDP_011 not in the Motif Atlas
- Geometric match to J3_5D8H_001
- Geometric discrepancy: 0.2701
- The information below is about J3_5D8H_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37832.2
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9NDP|1|5|G|1969
9NDP|1|5|A|1970
9NDP|1|5|U|1971
*
9NDP|1|5|G|1995
9NDP|1|5|C|1996
9NDP|1|5|U|1997
9NDP|1|5|A|1998
9NDP|1|5|A|1999
9NDP|1|5|G|2000
9NDP|1|5|G|2001
*
9NDP|1|5|C|2016
9NDP|1|5|A|2017
9NDP|1|5|C|2018
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain s
- 60S acidic ribosomal protein P0
- Chain t
- 60S ribosomal protein L12
Coloring options: