J3_9NJV_021

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGG*CUUGA*UGACG

Length

13 nucleotides

Bulged bases

9NJV|1|R3|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJV_021 not in the Motif Atlas

Homologous match to J3_5J7L_051

Geometric discrepancy: 0.1272

The information below is about J3_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.4

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9NJV|1|R3|C|586
9NJV|1|R3|G|587
9NJV|1|R3|G|588
*
9NJV|1|R3|C|651
9NJV|1|R3|U|652
9NJV|1|R3|U|653
9NJV|1|R3|G|654
9NJV|1|R3|A|655
*
9NJV|1|R3|U|751
9NJV|1|R3|G|752
9NJV|1|R3|A|753
9NJV|1|R3|C|754
9NJV|1|R3|G|755

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sh

30S ribosomal protein S8

Chain sl

Small ribosomal subunit protein uS12

Chain so

Small ribosomal subunit protein uS15

Chain sq

Small ribosomal subunit protein uS17