3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
9NJV|1|R3|U|871, 9NJV|1|R3|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9NJV_023 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.1114
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

9NJV|1|R3|C|826
9NJV|1|R3|U|827
9NJV|1|R3|U|828
9NJV|1|R3|G|829
*
9NJV|1|R3|C|857
9NJV|1|R3|G|858
9NJV|1|R3|G|859
9NJV|1|R3|A|860
9NJV|1|R3|G|861
*
9NJV|1|R3|C|868
9NJV|1|R3|G|869
9NJV|1|R3|U|870
9NJV|1|R3|U|871
9NJV|1|R3|A|872
9NJV|1|R3|A|873
9NJV|1|R3|G|874

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain sb
Small ribosomal subunit protein uS2
Chain sh
30S ribosomal protein S8
Chain su
Small ribosomal subunit protein bS21

Coloring options:


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